Function reference • ConDecon

Main Functions

RunConDecon(): Run ConDecon

PlotConDecon(): Plot ConDecon_obj

TransferFeatures(): TransferFeatures

BuildTrainingSet(): Build the training dataset

Map2Latent(): Map2Latent

BuildModel(): Fit a regression model

PredictCellProb(): PredictCellProb

CalcRelativeCellProb(): Calculate Relative cell prob distribution

ComputeProximityScore(): ComputeProximityScore

Example data

counts_gps: Example single-cell counts data

latent_gps: Example PCA latent space

variable_genes_gps: Variable genes

meta_data_gps: meta data for 'counts_gps', the single-cell RNA-seq data

bulk_gps: Example bulk data

true_prop_gps: True cell type proportions